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Drug Details

General Information of the Drug (ID: DR7865)
Name
Birinapant
Synonyms
Birinapant; 1260251-31-7; Birinapant (TL32711); TL32711; TL-32711; UNII-6O4Z07B57R; TL 32711; 6O4Z07B57R; (2S)-N-[(2S)-1-[(2R,4S)-2-[[6-fluoro-2-[6-fluoro-3-[[(2R,4S)-4-hydroxy-1-[(2S)-2-[[(2S)-2-(methylamino)propanoyl]amino]butanoyl]pyrrolidin-2-yl]methyl]-1H-indol-2-yl]-1H-indol-3-yl]methyl]-4-hydroxypyrrolidin-1-yl]-1-oxobutan-2-yl]-2-(methylamino)propanamide; (2s,2's)-N,N'-[(6,6'-Difluoro-1h,1'h-2,2'-Biindole-3,3'-Diyl)bis{methanediyl[(2r,4s)-4-Hydroxypyrrolidine-2,1-Diyl][(2s)-1-Oxobutane-1,2-Diyl]}]bis[2-(Methylamino)propanamide]; Propanamide, N,N'-[(6,6'-difluoro[2,2'-bi-1H-indole]-3,3'-diyl)bis[methylene[(2R,4S)-4-hydroxy-2,1-pyrrolidinediyl][(1S)-1-ethyl-2-oxo-2,1-ethanediyl]]]bis[2-(methylamino)-, (2S,2'S)-; Birinapant [USAN:INN]; Birinapant di-HCl; Birinapant (USAN/INN); MLS006011237; GTPL7432; TL32711 2HCl; CHEMBL3039522; SCHEMBL10049847; DTXSID30155057; EX-A258; TL-32711 2HCl; C42H56F2N8O6; AOB87396; 2269AH; ABP001107; BDBM50071920; MFCD25976869; NSC767128; NSC816007; s7015; ZINC96941868; AKOS030526366; CCG-270498; CS-1719; DB11782; NSC-767128; NSC-816007; SB16522; AC-32868; AS-17035; HY-16591; SMR004702997; SW220103-1; A12738; D10417; Z-3165; Q27075298; (2S)-N-[(2S)-1-[(2R,4S)-2-[[6-fluoro-2-[6-fluoro-3-[[(2R,4S)-4-hydroxy-1-[(2S)-2-[[(2S)-2-(methylamino)propanoyl]amino]butanoyl]pyrrolidin-2-yl]methyl]-1H-indol-2-yl]-1H-indol-3-yl]methyl]-4-hydroxypyrrolidin-1-yl]-1-oxobutan-2-yl]-2-(methylamino)propanam; (2S,2'S)-N,N'-((2S,2'S)-((3S,3'S,5R,5'R)-5,5'-((6,6'-difluoro-1H,1'H-[2,2'-biindole]-3,3'-diyl)bis(methylene))bis(3-hydroxypyrrolidine-5,1-diyl))bis(1-oxobutane-2,1-diyl))bis(2-(methylamino)propanamide); (2S,2'S)-N,N'-((2S,2'S)-1,1'-((3S,3'S,5R,5'R)-5,5'-(6,6'-difluoro-1H,1'H-2,2'-biindole-3,3'-diyl)bis(methylene)bis(3-hydroxypyrrolidine-5,1-diyl))bis(1-oxobutane-2,1-diyl))bis(2-(methylamino)propanamide); (2S,2'S)-N,N'-[(6,6'-difluoro-1H,1'H-2,2'-biindole-3,3'-diyl)bis{methanediyl[(2R,4S)-4-hydroxypyrrolidine-2,1-diyl][(2S)-1-oxobutane-1,2-diyl]}]bis[2-(methylamino)propanamide] (non-preferred name); GT6
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Molecular Type
Small molecule
Disease Lymphoma [ICD-11: 2A80-2A86] Phase 2 [1]
Structure
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2D MOL

3D MOL

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Formula
C42H56F2N8O6
PubChem CID
49836020
Canonical SMILES
CCC(C(=O)N1CC(CC1CC2=C(NC3=C2C=CC(=C3)F)C4=C(C5=C(N4)C=C(C=C5)F)CC6CC(CN6C(=O)C(CC)NC(=O)C(C)NC)O)O)NC(=O)C(C)NC
InChI
1S/C42H56F2N8O6/c1-7-33(49-39(55)21(3)45-5)41(57)51-19-27(53)15-25(51)17-31-29-11-9-23(43)13-35(29)47-37(31)38-32(30-12-10-24(44)14-36(30)48-38)18-26-16-28(54)20-52(26)42(58)34(8-2)50-40(56)22(4)46-6/h9-14,21-22,25-28,33-34,45-48,53-54H,7-8,15-20H2,1-6H3,(H,49,55)(H,50,56)/t21-,22-,25-,26-,27-,28-,33-,34-/m0/s1
InChIKey
PKWRMUKBEYJEIX-DXXQBUJASA-N
CAS Number
CAS 1260251-31-7
TTD Drug ID
D0E8NP
DrugBank ID
DB11782
Combinatorial Therapeutic Effect(s) Validated Clinically or Experimentally
    α. A List of Natural Product(s) Able to Enhance the Efficacy of This Drug
          Paclitaxel      Taxus brevifolia     Click to Show/Hide the Molecular Data of This NP
                 Achieving Therapeutic Synergy     Click to Show/Hide
                    Representative Experiment Reporting the Effect of This Combination [2]
                    Detail(s)  Combination Info  click to show the detail info of this combination
                    Biological
                    Regulation
Induction Cell cycle arrest in G2/M phase
                    In-vitro Model PANC-1 CVCL_0480 Pancreatic ductal adenocarcinoma Homo sapiens
                    Experimental
                    Result(s)
Paclitaxel combined to birinapant could interrupt cell cycle progression by inducing G2/M arrest, whereas the single-drug treatments would not.
Target and Pathway
Target(s) Apoptosis inhibitor 2 (hIAP2)  Molecule Info  [3]
X-linked inhibitor of apoptosis protein (XIAP)  Molecule Info  [3]
KEGG Pathway NF-kappa B signaling pathway Click to Show/Hide
2 Ubiquitin mediated proteolysis
3 Apoptosis
4 Focal adhesion
5 Toxoplasmosis
6 HTLV-I infection
7 Pathways in cancer
8 Small cell lung cancer
9 Hippo signaling pathway
10 NOD-like receptor signaling pathway
11 TNF signaling pathway
NetPath Pathway TCR Signaling Pathway Click to Show/Hide
Panther Pathway Apoptosis signaling pathway Click to Show/Hide
2 CCKR signaling map ST
Pathway Interaction Database p75(NTR)-mediated signaling Click to Show/Hide
2 BMP receptor signaling
3 Caspase Cascade in Apoptosis
4 TGF-beta receptor signaling
5 Canonical NF-kappaB pathway
6 CD40/CD40L signaling
7 FAS (CD95) signaling pathway
8 TNF receptor signaling pathway
Reactome SMAC binds to IAPs Click to Show/Hide
2 SMAC-mediated dissociation of IAP:caspase complexes
3 Deactivation of the beta-catenin transactivating complex
4 RIPK1-mediated regulated necrosis
5 Regulation of TNFR1 signaling
6 TNFR1-induced NFkappaB signaling pathway
7 Regulation of necroptotic cell death
8 Apoptotic cleavage of cellular proteins
9 NOD1/2 Signaling Pathway
10 TNFR2 non-canonical NF-kB pathway
11 TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway
12 IKK complex recruitment mediated by RIP1
WikiPathways Copper homeostasis Click to Show/Hide
2 Focal Adhesion
3 Apoptosis
4 Intrinsic Pathway for Apoptosis
5 Apoptosis Modulation and Signaling
6 NOD pathway
7 TNF alpha Signaling Pathway
8 TWEAK Signaling Pathway
9 Apoptotic execution phase
References
Reference 1 URL: http://www.guidetopharmacology.org Nucleic Acids Res. 2015 Oct 12. pii: gkv1037. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands. (Ligand id: 7432).
Reference 2 Temporal Effects of Combined Birinapant and Paclitaxel on Pancreatic Cancer Cells Investigated via Large-Scale, Ion-Current-Based Quantitative Proteomics (IonStar). Mol Cell Proteomics. 2018 Apr;17(4):655-671.
Reference 3 cIAPs and XIAP regulate myelopoiesis through cytokine production in an RIPK1- and RIPK3-dependent manner. Blood. 2014 Apr 17;123(16):2562-72.
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Cite NPCDR
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Correspondence

X. N. Sun, Y. T. Zhang, Y. Zhou, X. C. Lian, L. L. Yan, T. Pan, T. Jin, H. Xie, Z. M. Liang, W. Q. Qiu, J. X. Wang, Z. R. Li, F. Zhu*, X. B. Sui*. NPCDR: natural product-based drug combination and its disease-specific molecular regulation. Nucleic Acids Research. 50(D1): 1324-1333 (2020). PMID: 34664659

Prof. Feng ZHU  (zhufeng@zju.edu.cn)

College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China


Prof. Xinbing SUI  (hzzju@hznu.edu.cn)

School of Pharmacy and Department of Medical Oncology, the Affiliated Hospital of Hangzhou Normal University, Hangzhou Normal University, Hangzhou, China